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A Phylogenetics and Variant Calling Pipeline to Support SARS-CoV-2 Genomic Epidemiology in the UK

Rachel Colquhoun,Aine O'Toole,Verity Hill,J. T. Mccrone, Xiaoyu Yu,Samuel M. Nicholls,Radoslaw Poplawski,Thomas Whalley,Natalie Groves,Nicholas Ellaby,Nick Loman,Tom Connor,Andrew Rambaut

VIRUS EVOLUTION（2024）

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Key words
SARS-CoV-2,genomic surveillance,genomic epidemiology,phylogenetics,software
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