Figure S1 from Novel Aberrations Uncovered in Barrett's Esophagus and Esophageal Adenocarcinoma Using Whole Transcriptome Sequencing

Jesper L.V. Maag,Oliver M. Fisher,Angelique Levert-Mignon,Dominik C. Kaczorowski,Melissa L. Thomas,Damian J. Hussey,David I. Watson,Antony Wettstein,Yuri V. Bobryshev,Melanie Edwards,Marcel E. Dinger,Reginald V. Lord

crossref（2023）

Cited 0|Views7

No score

Abstract

Tissue purity, RNA-seq based correlation analysis, and gene ontology enrichment. ESTIMATE (see methods) was used for in silico assessment of the (a) tissue purity, (c) stromal contamination, and (b) immune infiltration of each patient from the Normal esophagus (NE), Non-dysplastic Barrett's esophagus (NDBE), Low-grade dysplasia (LGD) and Esophageal adenocarcinoma (EAC) group. (d) Scatterplot comparing the mean expression (log2(cpm 1)) of all Gencode genes between each condition. Spearman correlation (R) shows the correlation score. (e) Venn diagram of the differentially expressed (absolute log2FC{greater than or equal to}1, FDR

Translated text

AI Read Science

Must-Reading Tree

Example

Generate MRT to find the research sequence of this paper

Chat Paper

Summary is being generated by the instructions you defined