Figure S1 from Novel Aberrations Uncovered in Barrett's Esophagus and Esophageal Adenocarcinoma Using Whole Transcriptome Sequencing
crossref(2023)
Abstract
Tissue purity, RNA-seq based correlation analysis, and gene ontology enrichment. ESTIMATE (see methods) was used for in silico assessment of the (a) tissue purity, (c) stromal contamination, and (b) immune infiltration of each patient from the Normal esophagus (NE), Non-dysplastic Barrett's esophagus (NDBE), Low-grade dysplasia (LGD) and Esophageal adenocarcinoma (EAC) group. (d) Scatterplot comparing the mean expression (log2(cpm 1)) of all Gencode genes between each condition. Spearman correlation (R) shows the correlation score. (e) Venn diagram of the differentially expressed (absolute log2FC{greater than or equal to}1, FDR
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