DSAM: A Deep Learning Framework for Analyzing Temporal and Spatial Dynamics in Brain Networks
CoRR(2024)
Abstract
Resting-state functional magnetic resonance imaging (rs-fMRI) is a
noninvasive technique pivotal for understanding human neural mechanisms of
intricate cognitive processes. Most rs-fMRI studies compute a single static
functional connectivity matrix across brain regions of interest, or dynamic
functional connectivity matrices with a sliding window approach. These
approaches are at risk of oversimplifying brain dynamics and lack proper
consideration of the goal at hand. While deep learning has gained substantial
popularity for modeling complex relational data, its application to uncovering
the spatiotemporal dynamics of the brain is still limited. We propose a novel
interpretable deep learning framework that learns goal-specific functional
connectivity matrix directly from time series and employs a specialized graph
neural network for the final classification. Our model, DSAM, leverages
temporal causal convolutional networks to capture the temporal dynamics in both
low- and high-level feature representations, a temporal attention unit to
identify important time points, a self-attention unit to construct the
goal-specific connectivity matrix, and a novel variant of graph neural network
to capture the spatial dynamics for downstream classification. To validate our
approach, we conducted experiments on the Human Connectome Project dataset with
1075 samples to build and interpret the model for the classification of sex
group, and the Adolescent Brain Cognitive Development Dataset with 8520 samples
for independent testing. Compared our proposed framework with other
state-of-art models, results suggested this novel approach goes beyond the
assumption of a fixed connectivity matrix and provides evidence of
goal-specific brain connectivity patterns, which opens up the potential to gain
deeper insights into how the human brain adapts its functional connectivity
specific to the task at hand.
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