Antitumor studies on celastrol and its derivatives as ROR agonists and ROR inhibitors based on Alphafold reverse docking strategy

Bangwen Yue,Xiuli Wu

MEDICINAL CHEMISTRY RESEARCH(2024)

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摘要
Celastrol (CSL), an active compound extracted from the root bark of Tripterygium wilfordii, has been studied for its outstanding efficacy in anti-cancer and cerebral neurology. We have obtained a series of derivatives with reduced toxicity through biotransformation. Here, 23391 proteins of homo sapiens from AlphaFold DB and Schr & ouml;dinger's Glide were used for reverse docking with the basic scaffold of CSL to discover the pharmacological activity of its derivatives. Based on the drug target database, the targets selected for the study were the ROR alpha and ROR gamma of the Retinoic Acid Related-Orphan Receptors family (RORs). The series of compounds were filtered through QikProp, docked for dynamics stimulation and molecular mechanics-generalized born surface area (MMGBSA) binding energy calculations. We also performed fluorescence polarization assay (FP assay), luciferase reporter gene assay, and the CCK8 assay. In summary, we performed reverse docking of CSLs to find its key targets ROR alpha and ROR gamma to explain its anti-inflammatory and anti-tumor effects, found binding sites Gln19, Arg97, Arg100 for ROR alpha-Ligand binding domain (LBD) and Gln25, Leu26, Arg103, Arg106 for ROR gamma-LBD, screened for the highest affinity derivatives. The luciferase reporter gene assay showed that 2 mu M 18-OH-CSL and 28-OH-CSL had the strongest agonistic effect on ROR alpha-LBD, while CSLs had the weak inhibitory effect on ROR gamma-LBD, and these compounds also demonstrated a good apoptotic effect on the KG-1a tumor cell.
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关键词
Celastrol,ROR alpha,ROR gamma,Glide,AlphaFold DB,dynamics
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