Influence of Decomposed Stubble Return on the Soil Microbial Community Under Perennial Crop Rotation

The aim of this study was to understand how the application of decomposed stubble return (DSR), a type of bio-organic fertilization, affects soil microbial communities under crop rotation. The changes in microbial composition and diversity related to DSR were investigated based on metagenomic sequencing and comparative analysis of two groups of soil samples after a 3-year tomato-pepper-papaya rotation: the DSR and no-DSR (i.e., without DSR) groups, with the soils before crop rotation as the control group. Inter-group comparisons of the crop performance (growth and yield) and physicochemical soil properties (pH value, nutrient elements, and heavy metals) were also conducted to reveal the effects of DSR application on the soil. The relative abundance of bacteria was higher than 90