BIOMERO: BioImage analysis in OMERO
CoRR(2024)
摘要
In the rapidly evolving field of bioimaging, the integration and
orchestration of Findable, Accessible, Interoperable, and Reusable (FAIR) image
analysis workflows remains a challenge. We introduce BIOMERO, a bridge
connecting OMERO, a renowned bioimaging data management platform, FAIR
workflows and high-performance computing (HPC) environments. BIOMERO, featuring
our opensource Python library "OMERO Slurm Client", facilitates seamless
execution of FAIR workflows, particularly for large datasets from High Content
or High Throughput Screening. BIOMERO empowers researchers by eliminating the
need for specialized knowledge, enabling scalable image processing directly
from OMERO. BIOMERO notably supports the sharing and utilization of FAIR
workflows between OMERO, Cytomine/BIAFLOWS, and other bioimaging communities.
BIOMERO will promote the widespread adoption of FAIR workflows, emphasizing
reusability, across the realm of bioimaging research. Its user-friendly
interface will empower users, including those without technical expertise, to
seamlessly apply these workflows to their datasets, democratizing the
utilization of AI by the broader research community.
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