Platanosides from Platanus x acerifolia: New molecules, SAR, and target validation of a strong lead for drug-resistant bacterial infections and the associated sepsis

Xi-Ying Wu, Ze-Yu Zhao,Ezzat E. A. Osman, Xiao-Juan Wang, Yeun-Mun Choo,Menny M. Benjamin, Juan Xiong,Mark T. Hamann, Cheng Luo,Jin-Feng Hu

BIOORGANIC CHEMISTRY(2024)

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Abstract
Three undescribed (1-3) and nine known (4-12) platanosides were isolated and characterized from a bioactive extract of the May leaves of Platanus x acerifolia that initially showed inhibition against Staphylococcus aureus. Targeted compound mining was guided by an LC-MS/MS-based molecular ion networking (MoIN) strategy combined with conventional isolation procedures from a unique geographic location. The novel structures were mainly determined by 2D NMR and computational (NMR/ECD calculations) methods. Compound 1 is a rare acylated kaempferol rhamnoside possessing a truxinate unit. 6 (Z,E-platanoside) and 7 (E,E-platanoside) were confirmed to have remarkable inhibitory effects against both methicillin-resistant S. aureus (MIC: <= 16 mu g/mL) and glycopeptide-resistant Enterococcus faecium (MIC: <= 1 mu g/mL). These platanosides were subjected to docking analyses against FabI (enoyl-ACP reductase) and PBP1/2 (penicillin binding protein), both of which are pivotal enzymes governing bacterial growth but not found in the human host. The results showed that 6 and 7 displayed superior binding affinities towards FabI and PBP2. Moreover, surface plasmon resonance studies on the interaction of 1/7 and FabI revealed that 7 has a higher affinity (KD = 1.72 mu M), which further supports the above in vitro data and is thus expected to be a novel anti-antibacterial drug lead.
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Key words
Platanus x acerifolia,Platanosides,Molecular ion networking (MoIN),Antibacterial,Staphylococcus aureus,Enterococcus faecium,Structure -activity relationship (SAR),Molecular docking,Target validation
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