Deep residual networks for crystallography trained on synthetic data

Derek Mendez,James M. Holton,Artem Y. Lyubimov, Sabine Hollatz,Irimpan I. Mathews, Aleksander Cichosz, Vardan Martirosyan, Teo Zeng, Ryan Stofer, Ruobin Liu,Jinhu Song,Scott McPhillips, Mike Soltis,Aina E. Cohen

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY(2024)

引用 0|浏览4
暂无评分
摘要
The use of artificial intelligence to process diffraction images is challenged by the need to assemble large and precisely designed training data sets. To address this, a codebase called Resonet was developed for synthesizing diffraction data and training residual neural networks on these data. Here, two per-pattern capabilities of Resonet are demonstrated: (i) interpretation of crystal resolution and (ii) identification of overlapping lattices. Resonet was tested across a compilation of diffraction images from synchrotron experiments and X-ray free-electron laser experiments. Crucially, these models readily execute on graphics processing units and can thus significantly outperform conventional algorithms. While Resonet is currently utilized to provide real-time feedback for macro-molecular crystallography users at the Stanford Synchrotron Radiation Lightsource, its simple Python-based interface makes it easy to embed in other processing frameworks. This work highlights the utility of physics-based simulation for training deep neural networks and lays the groundwork for the development of additional models to enhance diffraction collection and analysis.
更多
查看译文
关键词
artificial intelligence,serial crystallography,rotation crystallography,synchrotrons,XFELs
AI 理解论文
溯源树
样例
生成溯源树,研究论文发展脉络
Chat Paper
正在生成论文摘要