Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal
FRONTIERS IN MICROBIOLOGY(2023)
摘要
Halophilic bacterial strains, designated SG2L-4 T , SB1M4, and SB2L-5, were isolated from jeotgal, a traditional Korean fermented food. Cells are Gram-stain-negative, aerobic, non-motile, rod-shaped, catalase-positive, and oxidase-negative. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain SG2L-4 T is closely related to Halomonas garicola KACC 18117 T with a similarity of 96.2%. The complete genome sequence of strain SG2L-4 T was 3,227,066 bp in size, with a genomic G + C content of 63.3 mol%. The average nucleotide identity and digital DNA-DNA hybridization values between strain SG2L-4 T and H. garicola KACC 18117 T were 90.5 and 40.7%, respectively. The optimal growth conditions for strain SG2L-4 T were temperatures between 30 and 37 degrees C, a pH value of 7, and the presence of 10% (w/v) NaCl. The polar lipids identified included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unknown phospholipid, an unknown glycolipid, and an unknown polar lipid. The major cellular fatty acids were C 16:0 , summed features 8 (C 18:1 omega 6 c and/or C 18:1 omega 7 c ), C 19:0 cyclo omega 8 c , and summed features 3 (C 16:1 omega 6 c and/or C 16:1 omega 7 c ). The predominant respiratory quinone was ubiquinone with nine isoprene units (Q-9). Based on the phenotypic, genotypic, and chemotaxonomic results, strain SG2L-4 T represents a novel species within the genus Halomonas , for which the name Halomonas piscis sp. nov. is proposed. The type strain is SG2L-4 T (=KCTC 92842 T = JCM 35929 T ). Functional annotation of the genome of strain SG2L-4 T confirmed the presence of exopolysaccharide synthesis protein (ExoD) and capsular polysaccharide-related genes. Strain SG2L-4 T also exhibited positive results in Molisch's test, indicating the presence of extracellular carbohydrates and exopolysaccharides (EPS) production. These findings provide valuable insights into the EPS-producing capabilities of H. piscis sp. nov. isolated from jeotgal, contributing to understanding its potential roles in food and biotechnological applications.
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关键词
Halomonas,halophilic bacteria,jeotgal,exopolysaccharide,exopolysaccharide-producing bacteria
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