A risk model based on ferroptosis- and cuproptosis-related lncRNAs predicts prognosis and immune microenvironment in lung adenocarcinoma by bioinformatics analysis and experimental verification

AMERICAN JOURNAL OF CANCER RESEARCH(2023)

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摘要
Ferroptosis and cuproptosis are both novel types of cell death. Long noncoding RNAs (lncRNAs) are associated with multiple cancers. Notably, bioinformatics study of ferroptosis-and cuproptosis-related lncRNAs (FCLs) in lung adenocarcinoma (LUAD) has not been elucidated. In this study, we used univariate Cox, multivariate Cox, and least absolute shrinkage and selection operator Cox (LASSO-Cox) analyses to screen three FCLs, namely AC079193.2, AC090559.1, and AL512363.1. We then showed that these three FCLs were tumor-specific and correlated with ferroptosis and cuproptosis using qRT-PCR. Next, a prognostic risk model consisting of high-and low-risk cohorts was successfully constructed based on The Cancer Genome Atlas-LUAD data. The high-risk group consistently demonstrated poor prognosis. The accuracy of the model was evaluated using AUC, C-index curves, and nomograms. Furthermore, KEGG and GO analysis with R software showed significant enrichment in immune functions and metabolic pathways. Hereto, the immune function and immune cell expression results were more pronounced in the low-risk versus high-risk group. In conclusion, the prognostic risk model comprised of three FCLs effectively predicted patient outcomes and is associated with the immune microenvironment in LUAD.
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关键词
Bioinformatics analysis,lung adenocarcinoma,ferroptosis &amp,cuproptosis-related lncRNA,risk model,prognosis,immune microenvironment
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