Biolearn, an open-source library for biomarkers of aging

Kejun Ying, Seth Paulson, Alec Eames, Siyuan Li, Martin Perez-Guevara, Mehrnoosh Emamifar, Maximiliano Casas Martínez,Dayoon Kwon, Michael Snyder, Dane Gobel,Jesse R. Poganik,Mahdi Moqri,Vadim N. Gladyshev

biorxiv(2024)

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摘要
Identifying and validating biomarkers of aging is pivotal for understanding the aging process and testing longevity interventions. Despite the development of numerous aging biomarkers, their clinical validation remains elusive, largely due to the lack of cross-population validation, which is hampered by disparate biomarker designs and inconsistencies in dataset structures. To bridge this gap, we introduce Biolearn, an innovative open-source library dedicated to the implementation and application of aging biomarkers. Biolearn facilitates (1) harmonization of existing aging biomarkers, while presenting a structured framework for novel biomarkers in standardized formats; (2) unification of public datasets, ensuring coherent structuring and formatting, thus simplifying cross-population validation studies; and (3) provision of computational methodologies to assess any harmonized biomarker against unified datasets. By furnishing a community-driven platform, Biolearn significantly streamlines the development, assessment, and validation of aging biomarkers, paving the way toward more rigorous clinical validation and, ultimately, application in clinical trials targeting healthy longevity. The Biolearn package is open-source and freely available at ### Competing Interest Statement The authors have declared no competing interest.
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