The Assembly Process of Free-Living and Particle-Attached Bacterial Communities in Shrimp-Rearing Waters: The Overwhelming Influence of Nutrient Factors Relative to Microalgal Inoculation

Simple Summary Inoculating microalgae has been established as having the potential to enhance the microenvironment of shrimp-rearing water, but its relative role in bacterial community assembly in comparison to nutrient enrichment remains largely unexplored. By inoculating two indigenous dominant microalgae, Nannochloropsis oculata and Thalassiosira weissflogii, into shrimp-rearing waters, we studied the effect of microalgal inoculation and nutrient enrichment on the assembly of particle-attached lifestyles and free-living bacterial communities in rearing water. The key findings include the following: (i) The inoculation of beneficial microalgae contributed to water purification, and the purifying ability of T. weissflogii was better than that of N. oculata. (ii) The differences between the particle-attached and free-living bacterial communities were significant in terms of composition, representative bacteria, and driving factors, although their dynamic patterns were similar. (iii) Nutrients were vital direct driving factors for bacterial community assembly; however, microalgae indirectly affected the bacterial community via nutrient absorption and nutrient interactions. This work contributes to revealing the assembly mechanism of the bacterial community in rearing waters, which could provide a scientific basis for maintaining a healthy rearing environment and provide a new avenue for optimizing and developing microbial management strategies.Abstract The ecological functions of bacterial communities vary between particle-attached (PA) lifestyles and free-living (FL) lifestyles, and separately exploring their community assembly helps to elucidate the microecological mechanisms of shrimp rearing. Microalgal inoculation and nutrient enrichment during shrimp rearing are two important driving factors that affect rearing-water bacterial communities, but their relative contributions to the bacterial community assembly have not been evaluated. Here, we inoculated two microalgae, Nannochloropsis oculata and Thalassiosira weissflogii, into shrimp-rearing waters to investigate the distinct effects of various environmental factors on PA and FL bacterial communities. Our study showed that the composition and representative bacteria of different microalgal treatments were significantly different between the PA and FL bacterial communities. Regression analyses and Mantel tests revealed that nutrients were vital factors that constrained the diversity, structure, and co-occurrence patterns of both the PA and FL bacterial communities. Partial least squares path modeling (PLS-PM) analysis indicated that microalgae could directly or indirectly affect the PA bacterial community through nutrient interactions. Moreover, a significant interaction was detected between PA and FL bacterial communities. Our study reveals the unequal effects of microalgae and nutrients on bacterial community assembly and helps explore microbial community assembly in shrimp-rearing ecosystems.