Interferon regulatory factor 7 modulates virus clearance and immune responses to alphavirus encephalomyelitis.

Central nervous system (CNS) infection with Sindbis virus (SINV), the prototypic alphavirus, results in encephalomyelitis in a well-established mouse model that is used to characterize immune factors important in controlling viral infection in neurons. We have previously shown that interferon regulatory factor (IRF) 7 is required for survival from SINV encephalomyelitis, as mice deficient in IRF7 () develop paralysis and fatal disease within 7-8 days after infection without clearing infectious virus from the CNS. To determine the contributions of this innate immune factor in the prevention of fatal disease, we characterized the antiviral immune response to SINV infection in and C57BL/6J [wild-type (WT)] mice. mice had prolonged and widespread viral infection in motor neuron-rich regions of the CNS associated with more rapid and severe immunopathology in these regions. Proportions of CD8 T cells and inflammatory macrophages were higher in mice following infection, but T cells infiltrating the CNS produced fewer antiviral cytokines than in WT mice. Levels of IFN-γ and SINV-specific antibody in motor neuron-rich regions of the brain were comparable or higher than WT, indicating that IRF7 deficiency does not impair expression of these immune factors important in facilitating viral clearance. Therefore, IRF7 is required for the clearance of SINV from motor neuron-rich regions of the CNS through a mechanism that either is necessary for the neuronal response to currently identified mediators of infectious virus clearance or enables the production of additional antiviral factor(s) needed for clearance. IMPORTANCE Viral encephalomyelitis outcome is dependent on host responses to neuronal infection. Interferon (IFN) is an important component of the innate response, and IFN regulatory factor (IRF) 7 is an inducible transcription factor for the synthesis of IFN-α. IRF7-deficient mice develop fatal paralysis after CNS infection with Sindbis virus, while wild-type mice recover. mice produce low levels of IFN-α but high levels of IFN-β with induction of IFN-stimulated genes, so the reason for this difference is not understood. The current study shows that mice developed inflammation earlier but failed to clear virus from motor neuron-rich regions of the brainstem and spinal cord. Levels of IFN-γ and virus-specific antibody were comparable, indicating that IRF7 deficiency does not impair expression of these known viral clearance factors. Therefore, IRF7 is either necessary for the neuronal response to currently identified mediators of clearance or enables the production of additional antiviral factor(s) needed for clearance.