Genome assembly and annotation of the Sharp-nosed Pit Viper Deinagkistrodon acutus based on next-generation sequencing data.

Xinyu Wang, Lirong Liu, Wenbiao Zhu,Shiqing Wang,Minhui Shi,Shuhui Yang,Haorong Lu, Jun Cao

GigaByte (Hong Kong, China)(2023)

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摘要
The study of the currently known >3,000 species of snakes can provide valuable insights into the evolution of their genomes. , also known as Sharp-nosed Pit Viper, one hundred-pacer viper or five-pacer viper, is a venomous snake with significant economic, medicinal and scientific importance. Widely distributed in southeastern China and South-East Asia, has been primarily studied for its venom. Here, we employed next-generation sequencing to assemble and annotate a highly continuous genome of . The genome size is 1.46 Gb; its scaffold N50 length is 6.21 Mb, the repeat content is 42.81%, and 24,402 functional genes were annotated. This study helps to further understand and utilize and its venom at the genetic level.
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关键词
genome assembly,sharp-nosed,next-generation
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