"iNETgrate": integrating DNA methylation and gene expression data in a single gene network.
Research square(2023)
Abstract
Integrating multi-omics data in one model can increase statistical power. However, designing such a model is challenging because different omics are measured at different levels. We developed the iNETgrate package (https://bioconductor.org/packages/iNETgrate/) that efficiently integrates transcriptome and DNA methylation data in a single gene network. Applying iNETgrate on five independent datasets improved prognostication compared to common clinical gold standards and a patient similarity network approach.
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Key words
gene expression data,dna methylation,gene expression
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