Genetic and cultural evidence suggests a refugium for killer whales off Japan during the Last Glacial Maximum

During glacial periods, highly mobile species were able to shift their ranges to warmer regions that remained ice-free-so-called "glacial refugia." Glacial refugia often preserved higher levels of genetic diversity than areas that were colonized after the retreat of glaciers. In this study, we examined genetic and vocal variation in R-type ("resident") killer whales, Orcinus orca, from Nemuro Strait in the western North Pacific to test the hypothesis that environmentally stable marine regions may have preserved refugial populations of the killer whale that retained historical genetic and cultural diversity. We found three distinct mtDNA control region haplotypes and stereotyped calls that differed significantly from the repertoire of a population further north off Kamchatka and the adjacent western North Pacific. Therefore, both genetic and cultural evidence suggest that at least some killer whales from Nemuro Strait represent a separate maternal lineage. The control region haplotype diversity for Nemuro Strait is comparable to that for the rest of the North Pacific. The data presented here are consistent with the existence of the southwestern glacial refugium for killer whales in the waters off northern Japan during the Last Glacial Maximum.