PvMSP-3 alpha and PvMSP-3 ss genotyping reveals higher genetic diversity in Plasmodium vivax parasites from migrant workers than residents at the China-Myanmar border

INFECTION GENETICS AND EVOLUTION(2022)

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Abstract
Background: The genetic diversity of malaria parasites traces the origin and spread of new variants and can be used to evaluate the effectiveness of malaria control measures. Therefore, this study aims to improve the understanding of the molecular epidemiology of Plasmodium vivax malaria at the China-Myanmar border by genotyping the PvMSP-3 alpha and PvMSP-3 ss genes. Methods: Blood samples were collected from P. vivax malaria patients along the China-Myanmar border. The PvMSP-3 alpha and PvMSP-3 ss genes were amplified by polymerase chain reaction (PCR) and the genetic polymorphism and haplotype of the two genes were analyzed. Results: A total of 422 blood samples were used for this study, of which 224 were analyzed at PvMSP-3 alpha and 126 at PvMSP-3 ss. Samples mainly were from young adults aged 18-45 years, although local patients were significantly younger than migrant laborers crossing the border at Tengchong (P < 0.0001). Molecular evolutionary analysis revealed that PvMSP-3 alpha and PvMSP-3 ss underwent diversifying natural selection, and intragenic recombination contributed to the diversity of the isolates. Based on the length of the genes, we identified three types of PvMSP-3 alpha [1.9-2.0 kb (Type-A), 1.4-1.5 kb (Type-B), and 1.1-1.3 kb (Type-C)] and two types of PvMSP3 ss [1.7-2.2 kb (Type-A) and 1.4-1.5 kb (Type-B)]. Migrant laborers returning to China through Tengchong bore P. vivax infections displaying significantly higher genetic diversity than local residents. Conclusions: Both PvMSP-3 paralogs were subjected to diversifying selection in each sample population. Clustering of alleles supports ephemeral endemic differentiation of alleles, but the broader phylogeny suggests that alleles transit the globe, perhaps accelerated by movements of migrants such as those transiting Tengchong.
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Key words
Malaria, Genetic polymorphism, Natural selection, Population structure, Linkage disequilibrium, Genetic recombination
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