cTULIP: application of a human-based RNA-seq primary tumor classification tool for cross-species primary tumor classification in canine.
Frontiers in oncology(2023)
摘要
The results of this study indicate that using protein-coding one-to-one homologs as the features in the input layer of TULIP performs good primary tumor prediction in both humans and canines. Furthermore, our analysis shows that our selected features also contain the majority of features with known clinical relevance in BLCA and gliomas. Our success in using a human-data-trained model for cross-species primary tumor prediction also sheds light on the conservation of oncological pathways in humans and canines, further underscoring the importance of the canine model system in the study of human disease.
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关键词
comparative oncology, deep learning, machine learning, bladder cancer, tumor classification, glioma
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