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splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq

bioRxiv (Cold Spring Harbor Laboratory)(2023)

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Abstract
Motivation Analysis of alternative splicing using short-read RNA-seq data is a complex process that involves several steps: alignment of reads to the reference genome, identification of alternatively spliced features, motif discovery, analysis of RNA-protein binding near donor and acceptor splice sites, and exploratory data visualization. Results We introduce splicekit , a python package that provides a comprehensive set of tools for conducting splicing analysis. Availability and implementation and over PyPI. ### Competing Interest Statement The authors have declared no competing interest.
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Key words
splicekit,short-read,rna-seq
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