splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq
bioRxiv (Cold Spring Harbor Laboratory)(2023)
Abstract
Motivation Analysis of alternative splicing using short-read RNA-seq data is a complex process that involves several steps: alignment of reads to the reference genome, identification of alternatively spliced features, motif discovery, analysis of RNA-protein binding near donor and acceptor splice sites, and exploratory data visualization.
Results We introduce splicekit , a python package that provides a comprehensive set of tools for conducting splicing analysis.
Availability and implementation and over PyPI.
### Competing Interest Statement
The authors have declared no competing interest.
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Key words
splicekit,short-read,rna-seq
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