Database for queries of melanoma cohorts with molecular and clinical data
PIGMENT CELL & MELANOMA RESEARCH(2023)
Abstract
Large genome-scale studies are deposited in various public sequence repositories. However, their access and analysis can be non-trivial to infrequent users. Here, we present a new database connecting whole transcriptomes with clinical data for straight-forward access and analysis of patient-specific samples. Users can perform association tests of survival and gene expression across different cohorts, identify cell-type expressions, or correlate the presence of immune cells. In summary, we present a new data hub for bench scientists to perform replication and discovery studies.
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Key words
data integration, immune checkpoint inhibition, immune infiltration, melanoma, RNA-seq
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