Supplementary Figures 1-12 from Pan-Cancer Molecular Classes Transcending Tumor Lineage Across 32 Cancer Types, Multiple Data Platforms, and over 10,000 Cases

Supplementary Figure 1. Schematic of the various analyses performed in this study (with associated main and supplementary figures) and their relation to results provided in the supplementary data files; Supplementary Figure 2. Multiplatform-based molecular classification of cancers representing 32 major types; Supplementary Figure 3, related to Supplementary Figure 2. DNA copy alteration patterns associated with the multiplatform-based molecular subtypes of Supplementary Figure 1; Supplementary Figure 4, related to Supplementary Figure 2. Multiplatform-based molecular classification of cancers using k-means clustering method; Supplementary Figure 5, related to Figure 1. Additional molecular features characterizing the pan-cancer molecular subclasses; Supplementary Figure 7, related to Figure 1. Enriched gene categories associated with pan-cancer molecular classes. Supplementary Figure 6, related to Figure 1. Associations of pan-cancer molecular classes with TCGA sample batches; Supplementary Figure 8. Somatic mutations and associated pathways across pan-cancer molecular classes; Supplementary Figure 9, related to Supplementary Figure 8. Somatic alteration patterns across pan-cancer molecular classes and cancer types; Supplementary Figure 10, related to Supplementary Figure 8. Somatic alteration patterns across pan-cancer molecular classes and cancer types, with considerations for cancer type and mutation rate; Supplementary Figure 11, related to Supplementary Figure 8. Somatic alteration patterns across pan-cancer molecular classes and cancer types, with considerations for tumor purity and sequencing coverage; Supplementary Figure 12, related to Figure 2. Other associations relevant to pan-cancer genomic classes associated with mesenchymal features.