Supplementary Tables from Dynamics of Genome Alterations in Crohn's Disease–Associated Colorectal Carcinogenesis

Supplementary Table S1. Genes included in OncoVar assay. Supplementary Table S2. Individual clinico-pathologic characteristics of patients with Crohn's disease associated colorectal carcinoma (CD-CRC). Supplementary Table S3. Individual clinico-pathologic characteristics of patients with sporadic mucinous colorectal cancer (MUC-CRC). Supplementary Table S4. Summary of fluorescence in situ hybridization (FISH) results. Supplementary Table S5. Tumor cell content and expected mutant allele fraction (MAF) of founding clones in Crohn's disease associated CRC and sporadic mucinous CRC. Supplementary Table S6. Epithelial cell content and expected mutant allele fraction (MAF) of founding clones in normal colonic mucosa, inflamed mucosa and dysplastic lesions from patients with Crohn's disease associated CRC. Supplementary Table S7. Analysis of microsatellite instability in non-dysplastic and dysplastic colonic mucosa. Supplementary Table S8. Summary of genome alterations in precursor lesions comprising non-dysplastic and dysplastic colonic mucosa.