Improving Genome Compression Performance by Extending Reference Sequences
2023 International Conference on Intelligent Supercomputing and BioPharma (ISBP)(2023)
Abstract
We propose an efficient referential genome compression algorithm called RCCG. It extends reference genomes by its reverse complementation and uses coprime window sampling to detect the maximum matches (MEMs) between two genome sequences. After the assessment, those selected matches will be united to form mutation-containing matches (MCMs). The average compression ratio of the proposed algorithm is higher than that of the state-of-the-art genome compression algorithms.
MoreTranslated text
Key words
referential,MEM,reverse complementation
AI Read Science
Must-Reading Tree
Example
Generate MRT to find the research sequence of this paper
Chat Paper
Summary is being generated by the instructions you defined