ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data

Understanding cellular metabolism is important across biotechnology and biomedical research and has critical implications in a broad range of normal and pathological conditions. Here, we introduce the user-friendly web-based platform ImmCellFie, which allows the comprehensive analysis of metabolic functions inferred from transcriptomic or proteomic data. We explain how to set up a run using publicly available omics data and how to visualize the results. The ImmCellFie algorithm pushes beyond conventional statistical enrichment and in-corporates complex biological mechanisms to quantify cell activity.For complete details on the use and execution of this protocol, please refer to Richelle et al. (2021).1