TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks.

Sara Jones,Matthew Beyers,Maulik Shukla,Fangfang Xia,Thomas Brettin,Rick Stevens,M Ryan Weil,Satishkumar Ranganathan Ganakammal

Cancer informatics（2022）

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摘要

We packaged all 4 models as a Python-based deep learning classification tool called TULIP (TUmor CLassIfication Predictor) for performing quality control on primary tumor samples and characterizing cancer samples of unknown tumor type. Further optimization of the models is needed to improve the accuracy of certain primary tumor types.

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关键词

Convolutional neural network,RNA-seq,The Cancer Genome Atlas (TCGA),deep learning,tumor classification

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