BASIN: A Semi-automatic Workflow, with Machine Learning Segmentation, for Objective Statistical Analysis of Biomedical and Biofilm Image Datasets

Timothy W Hartman,Evgeni Radichev,Hafiz Munsub Ali,Mathew Olakunle Alaba,Mariah Hoffman, Gideon Kassa,Rajesh Sani,Venkata Gadhamshetty,Shankarachary Ragi,Shanta M Messerli,Pilar de la Puente, Eric S Sandhurst,Tuyen Do,Carol Lushbough,Etienne Z Gnimpieba

Journal of Molecular Biology（2023）

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摘要

•Development of BASIN for statistical analysis of micrograph object data.•BASIN provides an analysis report following FAIR guiding principles.•Users can retrieve analysis results, plots, and tables for immediate or future use.•BASIN is available online for small datasets and locally for large image datasets.•BASIN is an easy-to-use workflow for two-condition analysis of bio-images.

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关键词

image comparison,microscope imaging,machine learning,segmentation,statistical analysis,FAIR,Microbe,biofilm,cancer

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