Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination

Social Science Research Network（2022）

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摘要

•Whole-genome sequencing of SARS-CoV-2 when Delta and Omicron variants co-circulated•18 samples (<0.1%) were confirmed to be Delta-Omicron co-infections•Recombination of Delta and Omicron detected in one of the co-infection samples•Infections by clonal Delta-Omicron recombinants was rare, only 2 samples

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关键词

RNA virus,SARS-CoV-2,Delta,Omicron,BA.1,sequencing,alternative allele fraction,co-infection,recombination,breakpoint

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