Abnormalities in both somatic and germ cells differentiate noa testes from normal controls using single cell rna sequencing

You have accessJournal of UrologyCME1 May 2022PD36-12 ABNORMALITIES IN BOTH SOMATIC AND GERM CELLS DIFFERENTIATE NOA TESTES FROM NORMAL CONTROLS USING SINGLE CELL RNA SEQUENCING Arina Piechka, Ghazal Ebrahimi, Meghan Robinson, Anton Afanassiev, Geoffrey Schiebinger, Eric Belanger, Faraz Hach, and Ryan Flannigan Arina PiechkaArina Piechka More articles by this author , Ghazal EbrahimiGhazal Ebrahimi More articles by this author , Meghan RobinsonMeghan Robinson More articles by this author , Anton AfanassievAnton Afanassiev More articles by this author , Geoffrey SchiebingerGeoffrey Schiebinger More articles by this author , Eric BelangerEric Belanger More articles by this author , Faraz HachFaraz Hach More articles by this author , and Ryan FlanniganRyan Flannigan More articles by this author View All Author Informationhttps://doi.org/10.1097/JU.0000000000002594.12AboutPDF ToolsAdd to favoritesDownload CitationsTrack CitationsPermissionsReprints ShareFacebookLinked InTwitterEmail Abstract INTRODUCTION AND OBJECTIVE: The etiology of Non-obstructive azoospemia (NOA) remains largely unknown. Furthermore, significant heterogeneity exists between and within NOA patients’ testes. This study aimed to capture heterogeneity within an NOA testis and investigate cell-type-specific abnormalities to normal controls. METHODS: Two testis biopsies were derived from one patient with NOA with known histologic heterogeneity, and one normal control. ScRNAseq was carried out using 10X Genomics and Illumina sequencing platforms in technical duplicates. Cell clustering, gene expression, Ingenuity Pathway Analysis (IPA), ligand-receptor analyses and TradeSeq pseudotime differential expression analyses were used to evaluate the datasets. RESULTS: Cell types detected in our normal control was congruent with the previously published dataset. One NOA sample largely lacked germ cells and was broadly categorized as Sertoli Cell Only (SCO). This sample uniquely demonstrated a large cluster of cells expressing a mixture of Leydig and myoid genes; this same cluster exhibited high expression of NR4A1-known marker of common progenitor of Leydig and myoid cells. T cells and granulocytes were also present while absent among normal controls. In the second NOA sample, we detected all germ cells up to elongated spermatids and labelled this as hypospermatogenesis (HS). In this HS NOA sample, T cells were also present. After aligning the normal germ cells and HS NOA germ cells in pseudo time, differential gene expression and IPA pathway analyses revealed that NOA-derived germ cells had down regulation in RNA and nucleotide base excision repair mechanisms suggesting intrinsic deficiencies. Histology corroborated our scRNAseq results. CONCLUSIONS: Differentiating features of the SCO sample were the presence of T cells, granulocytes and an interstitial progenitor population. Pathway analyses of NOA germ cells suggest intrinsic abnormalities in RNA processing. Source of Funding: Canadian Institutes of Health Research; American Society of Reproductive Medicine; Vancouver Coastal Health Research Institute © 2022 by American Urological Association Education and Research, Inc.FiguresReferencesRelatedDetails Volume 207Issue Supplement 5May 2022Page: e637 Advertisement Copyright & Permissions© 2022 by American Urological Association Education and Research, Inc.MetricsAuthor Information Arina Piechka More articles by this author Ghazal Ebrahimi More articles by this author Meghan Robinson More articles by this author Anton Afanassiev More articles by this author Geoffrey Schiebinger More articles by this author Eric Belanger More articles by this author Faraz Hach More articles by this author Ryan Flannigan More articles by this author Expand All Advertisement PDF downloadLoading ...