Fpga-Based Acceleration Of Protein Docking

B. Sharat Chandra Varma,Kolin Paul,M. Balakrishnan

ARCHITECTURE EXPLORATION OF FPGA BASED ACCELERATORS FOR BIOINFORMATICS APPLICATIONS（2016）

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摘要

In this chapter, we discuss FPGA-based acceleration of a commonly used protein docking application. The docking application is compute intensive and involves floating-point computations. We used the methodology discussed in Chap. 3 to accelerate the application. Accordingly, we explain the identification of kernel from the software implementation and their FPGA implementation to get performance benefits.

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