Asymmetric Nucleophilic Allylation of α-Chloro Glycinate via Squaramide Anion-Abstraction Catalysis: SN1 or SN2 Mechanism, or Both?

The nucleophilic substitution mechanism of enantioselective allylation of α-chloro glycinate catalyzed by squaramide organocatalysts was studied using density functional theory. Based on a comprehensive study of SN1 and SN2 pathways of a catalyst-free reaction, we found that the catalytic reaction slightly favors the SN1 mechanism, instead of the previously proposed SN2 mechanism. Further investigation of different leaving groups and nucleophiles revealed that this is not limited to the present reaction, and the SN1 mechanism might have been generally overlooked. For the squaramide-catalyzed reactions, the SN1 mechanism was predicted to be preferred. However, the rate-determining step of the SN1 pathway has changed from the chloride-leaving step to the C-C bond-formation step. Therefore, a first-order dependence on both substrates was predicted, in agreement with the observed second-order kinetics. Intriguingly, the lowest-energy enantioselective transition states (TSs) originate from different pathways; R-inducing TS corresponds to the SN1 pathway, while S-inducing TS corresponds to SN2. The calculated enantiomeric excesses of two squaramide catalysts agree well with the experimental values. Given the ubiquity of nucleophilic substitution reactions in chemistry and biology, we believe that our finding will inspire more studies that will lead to an improved mechanistic understanding of important chemical reactions, and it may even lead to better catalysts.