Second Distinct Conformation Of The Phosphohistidine Loop In Succinyl-Coa Synthetase

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY(2021)

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Abstract
Succinyl-CoA synthetase (SCS) catalyzes a reversible reaction that is the only substrate-level phosphorylation in the citric acid cycle. One of the essential steps for the transfer of the phosphoryl group involves the movement of the phosphohistidine loop between active site I, where CoA, succinate and phosphate bind, and active site II, where the nucleotide binds. Here, the first crystal structure of SCS revealing the conformation of the phosphohistidine loop in site II of the porcine GTP-specific enzyme is presented. The phosphoryl transfer bridges a distance of 29 angstrom between the binding sites for phosphohistidine in site I and site II, so these crystal structures support the proposed mechanism of catalysis by SCS. In addition, a second succinate-binding site was discovered at the interface between the alpha- and beta-subunits of SCS, and another magnesium ion was found that interacts with the side chains of Glu141 beta and Glu204 beta via water-mediated interactions. These glutamate residues interact with the active-site histidine residue when it is bound in site II.
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Key words
succinyl-CoA synthetase, phosphohistidine loop, GDP, GMPPNP, GMPPCP, succinate, ATP-grasp fold
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