Bioinformatics Analysis Reveals Tspan1 As A Candidate Biomarker Of Progression And Prognosis In Pancreatic Cancer

BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES(2021)

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摘要
Pancreatic cancer (PCC) is a common malignant tumor of the digestive system that is resistant to traditional treatments and has an overall s-year survival rate of <7%. Transcriptomics research provides reliable biomarkers for diagnosis, prognosis, and clinical precision treatment, as well as the identification of molecular targets for the development of drugs to improve patient survival. We sought to identify new biomarkers for PCC by combining transcriptomics and clinical data with current knowledge regarding molecular mechanisms. Consequently, we employed weighted gene co-expression network analysis and differentially expressed gene analysis to evaluate genes co-expressed in tumor versus normal tissues using pancreatic adenocarcinoma data from The Cancer Genome Atlas and dataset GSEi6sis from the Gene Expression Omnibus. Twenty-one overlapping genes were identified, with enrichment of key Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways, including epidermal growth factor receptor signaling, cadherin, cell adhesion, ubiquinone, and glycosphingolipid biosynthesis pathways, and retinol metabolism. Protein-protein interaction analysis highlighted io hub genes, according to Maximal Clique Centrality. Univariate and multivariate COX analyses indicated that TSPANi serves as an independent prognostic factor for PCC patients. Survival analysis distinguished TSPANi as an independent prognostic factor among hub genes in PCC. Finally, immunohistochemical staining results suggested that the TSPANI protein levels in the Human Protein Atlas were significantly higher in tumor tissue than in normal tissue. Therefore, TSPANI may be involved in PCC development and act as a critical biomarker for diagnosing and predicting PCC patient survival.
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关键词
Pancreatic cancer, TSPANi, TCGA, GEO dataset, diagnosis and prognosis
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