Promoting carboxylate salts in the ESI source to simplify positive mode MS/MS sequencing of acid-terminated encoded polyurethanes

Synthetic polymers prepared by solid-phase processes are often released from the solid support by hydrolysis, leading to an acidic α chain-end which can usefully be employed to perform mass spectrometry experiments in the negative ion mode. This is the case for sequence-defined polyurethanes, which exhibit very simple MS/MS pattern as deprotonated species in great contrast to data obtained in the positive ion mode. Indeed, after deprotonation of their acidic end-group, collision induced dissociation (CID) of these polymers proceeds via competitive cleavages of all carbamate bonds. This leads to a unique series of anionic fragments spaced by the mass of one of the other coding co-monomer, enabling their sequence to be readily deciphered. However, as their size increases, polyurethanes are best ionized in the positive mode but their dissociation pattern is far more complicated, with four to five fragmentation routes depending on the adducted cation. This spectral complexity could however be highly reduced when selecting precursor ions that have experienced H/Na (or any other alkali) exchange in their acidic α end-group: in these conditions, only one reaction is observed and yields pairs of complementary products. Mechanisms could be proposed to explain how, although part of an end-group, the acidic proton had a key role in the dissociation processes of polyurethane chains. Exchange of this proton was then further optimized by proper selection of the X– anion in the NaX salt supplemented to the electrosprayed solution. By allowing simplification of MS/MS data while avoiding signal dilution over multiple ion series, CID of these [M – H + zNa](z–1)+ permitted to envisage reliable decoding of sequence-defined polyurethanes storing large amount of information.