Validation of a real-time PCR assay for detection of swinepox virus

Felipe Augusto Souza, Erlânio Marcelo dos Santos Júnior,Mateus Laguardia-Nascimento,Tânia Rosária Pereira Freitas,Clarissa R. Damaso, Anselmo V. Rivetti Júnior,Marcelo Fernandes Camargos,Antônio Augusto Fonseca Júnior

Archives of Virology(2019)

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摘要
Swine are the only known hosts of swinepox virus (SWPV), the sole member of the genus Suipoxvirus , family Poxviridae . Rapid diagnosis is recommended for appropriate interventions because of the high morbidity associated with this virus. This study describes a real-time quantitative PCR (qPCR) assay for rapid detection and quantification of SWPV. The detection limit, repeatability, reproducibility, and specificity of this assay were determined. The efficiency was 96%, and the R 2 value was 0.996. The detection limit was 1 fg or 10 −0.5 TCID 50 /50 μL. Tests showed that the greatest source of error in the SWPV qPCR assay was variation between analysts rather than different qPCR kits or equipment. All nucleic acids from other viruses or samples collected from swine were negative in the specificity test. qPCR for SWPV is a new method with tested variables that allows main sources of error in laboratory diagnosis and viral quantification to be identified.
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