Shewanella Carassii Sp Nov., Isolated From Surface Swabs Of Crucian Carp And Faeces Of A Diarrhoea Patient

Two strains, 08MAS2251(T) and LZ2016-166, were isolated from diverse samples in China collected from the surface of crucian carp and the faeces of a diarrhoea patient, respectively. Both strains were pink-orange coloured, Gram-negative, oxidase- and catalase-positive, facultative anaerobic and motile bacteria, produced H2S and reduced nitrates to nitrites. Growth occurred in the presence of 0-9% (w/v) NaCl and at 10-42 degrees C. The optimum conditions were with 1 % (w/v) NaCl and at 35 degrees C. The phylogenetic tree of 16S rRNA gene demonstrated that strains 08MAS2251(T) and LZ2016-166 clustered in a distinctive clade next to the species Shewanella chilikensis JC5(T) within the genus Shewanella. Meanwhile, gyrB gene sequence analysis indicated that the two strains formed an independent branch that was clearly separate from all the other Shewanella species with sequence similarities from 68.49 to 95.74%. The DNA G+C content of strain 08MAS2251(T) was 52.68 mol%. Genomic relatedness of in silico DNA-DNA hybridization between strain 08MAS2251(T) and phylogenetic neighbours ranged from 50.5-51.8 %, below the cutoff of 70 %. In addition, corresponding average nucleotide identity values were between 93.01 to 93.49%, which were lower than 95 % threshold. The major fatty acids of strain 08MAS2251(T) were C-17:1 omega 8c (27.2%), iso-C-15:0 (22.5 %), summed feature 3 (C-16:1 omega 6c and/or C-16:1 omega 7c; 8.7 %), C-16:0 (6.2 %), iso-C-13:0 (5.6 %) and C-17:0 (4.5 %). Based on phenotypic and genetic analysis, strains 08MAS2251(T) and LZ2016-166 are identified as a novel species of the genus Shewanella, for which the name Shewanellacarassii sp. nov. is proposed. The type strain is 08MAS2251(T) (=DSM 104682(T)=CGMCC 1.16033(T)).