Visualization and cellular hierarchy inference of single-cell data using SPADE

Benedict Anchang, Tom D P Hart,Sean C Bendall,Peng Qiu,Zach Bjornson,Michael Linderman,Garry P Nolan,Sylvia K Plevritis

NATURE PROTOCOLS（2016）

引用 96|浏览4

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摘要

SPADE is a density-based algorithm that can be used to organize data from heterogeneous populations of single cells into a two-dimensional tree representation. It can be applied to flow and mass cytometry data sets as well as to single-cell RNA-seq data.

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关键词

Functional clustering,Software,Gene expression analysis,Flow cytometry

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