Network Analysis Of Oyster Transcriptome Revealed A Cascade Of Cellular Responses During Recovery After Heat Shock

PLOS ONE(2012)

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摘要
Oysters, as a major group of marine bivalves, can tolerate a wide range of natural and anthropogenic stressors including heat stress. Recent studies have shown that oysters pretreated with heat shock can result in induced heat tolerance. A systematic study of cellular recovery from heat shock may provide insights into the mechanism of acquired thermal tolerance. In this study, we performed the first network analysis of oyster transcriptome by reanalyzing microarray data from a previous study. Network analysis revealed a cascade of cellular responses during oyster recovery after heat shock and identified responsive gene modules and key genes. Our study demonstrates the power of network analysis in a non-model organism with poor gene annotations, which can lead to new discoveries that go beyond the focus on individual genes.
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关键词
transcriptome analysis,network analysis,cluster analysis,microarrays,apoptosis,gene expression,transcriptome,gene expression profiling,heat shock response,gene regulatory networks
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