Comparative visualization of genetic and physical maps with Strudel.

Micha Bayer,Iain Milne,Gordon Stephen,Paul Shaw,Linda Cardle,Frank Wright,David Marshall

BIOINFORMATICS（2011）

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摘要

Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/.

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关键词

large datasets,desktop application,all-by-all comparison,mac os x,conserved synteny pattern,key role,data visualization,comparative genomics,physical maps interactively,comparative visualization,computer graphics,computational biology,genetics,genomics,genome

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