Supporting retrieval of diverse biomedical data using evidence-aware queries.

Journal of Biomedical Informatics(2010)

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摘要
Though there have been many advances in providing access to linked and integrated biomedical data across repositories, developing methods which allow users to specify ambiguous and exploratory queries over disparate sources remains a challenge to extracting well-curated or diversely-supported biological information. In the following work, we discuss the concepts of data coverage and evidence in the context of integrated sources. We address diverse information retrieval via a simple framework for representing coverage and evidence that operates in parallel with an arbitrary schema, and a language upon which queries on the schema and framework may be executed. We show that this approach is capable of answering questions that require ranged levels of evidence or triangulation, and demonstrate that appropriately-formed queries can significantly improve the level of precision when retrieving well-supported biomedical data.
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关键词
data coverage,retrieving well-supported biomedical data,database management,diverse biomedical data,arbitrary schema,disparate source,integrated biomedical data,ontology,evidence-aware query,diversely-supported biological information,appropriately-formed query,simple framework,information storage and retrieval,diverse information retrieval,query language,data diversity and provenance,integrated source,bioinformatics,data integration,biomedical research,data integrity,information retrieval,internet,semantics,level of evidence
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