His awards include the Spanish Royal Society Young Investigator Award (2006), an NSF Career Award (2008), an Alfred P. Sloan Fellowship (2009), a David and Lucile Packard Fellowship (2009), the IUPAP Young Scientist Prize in Semiconductor Physics (2010), a DOE Early Career Award (2011), a Presidential Early Career Award for Scientists and Engineers (PECASE, 2012), an ONR Young Investigator Award (2013), and a Moore Foundation Experimental Physics in Quantum Systems Investigator Award (2014). Prof. Jarillo-Herrero has been selected as a Highly Cited Researcher by Clarivate Analytics-Web of Science (2017-present), and was elected APS Fellow (2018), Fellow of the Quantum Materials Program of the Canadian Institute for Advanced Research (CIFAR, 2019), and Member at Large of the APS Division of Condensed Matter Physics (2019). Prof. Jarillo-Herrero is the recipient of the APS 2020 Oliver E. Buckley Condensed Matter Physics Prize, the 2020 Wolf Prize in Physics, the 2020 Medal of the Spanish Royal Physics Society, the 2021 Lise Meitner Distinguished Lecture and Medal, the 2021 Max Planck Humboldt Research Award, and the 2021 US National Academy of Sciences Award for Scientific Discovery. He became elected to the US National Academy of Sciences in 2022.