Marghoob Mohiyuddin - University of California

基本信息

Career Trajectory

Bio

Marghoob Mohiyuddin is a PhD student in the Department of Electrical Engineering and Computer Science at the University of California, Berkeley, and a member of the Future Technologies Group at Lawrence Berkeley National Laboratory. His research interests include computer architecture and performance tuning for scientific computing. Contact him at marghoob@eecs.berkeley.edu.

Research Interests

Papers共 51 篇Author StatisticsCo-AuthorSimilar Experts

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Methods for the Purification and Detection of Single Nucleotide KRAS Mutations on Extrachromosomal Circular DNA in Human Plasma

Lasse Bollehuus Hansen, Sandra Fugl Jakobsen,Egija Zole, Julie Boertmann Noer,Li Tai Fang,Sefa Alizadeh,Julia Sidenius Johansen,Marghoob Mohiyuddin,Birgitte Regenberg

Cancer Medicine（2023）

Cited5Views0WOSBibtex

Assessing Reproducibility of Inherited Variants Detected with Short-Read Whole Genome Sequencing

Genome Biology（2022）

Cited23Views0WOSBibtex

Targeted Removal of Mitochondrial DNA from Mouse and Human Extrachromosomal Circular DNA with CRISPR-Cas9

Weijia Feng,Gerard Arrey,Egija Zole,Wei Lv,Xue Liang,Peng Han,Marghoob Mohiyuddin,Henriette Pilegaard,Birgitte Regenberg

Computational and Structural Biotechnology Journal（2022）

Cited9Views0WOSBibtex

Achieving Robust Somatic Mutation Detection with Deep Learning Models Derived from Reference Data Sets of a Cancer Sample

Sahraeian Sayed Mohammad Ebrahim,Fang Li Tai,Karagiannis Konstantinos,Moos Malcolm,Smith Sean,Santana-Quintero Luis,Xiao Chunlin,Colgan Michael,Hong Huixiao,Mohiyuddin Marghoob,Xiao Wenming

Genome biology（2022）

Cited12Views0WOSBibtex

Additional File 12 of Assessing Reproducibility of Inherited Variants Detected with Short-Read Whole Genome Sequencing

Figshare (2022)

Cited0Views0Bibtex

Additional File 10 of Assessing Reproducibility of Inherited Variants Detected with Short-Read Whole Genome Sequencing

Figshare (2022)

Cited0Views0Bibtex

Precisionfda Truth Challenge V2: Calling Variants from Short- and Long-Reads in Difficult-to-map Regions

Nathan D. Olson,Justin Wagner,Jennifer McDaniel,Sarah H. Stephens,Samuel T. Westreich,Anish G. Prasanna,Elaine Johanson,Emily Boja,Ezekiel J. Maier,Omar Serang,David Jaspez,Jose M. Lorenzo-Salazar,Adrian Munoz-Barrera,Luis A. Rubio-Rodriguez,Carlos Flores,Konstantinos Kyriakidis,Andigoni Malousi,Kishwar Shafin,Trevor Pesout,Miten Jain,Benedict Paten,Pi-Chuan Chang,Alexey Kolesnikov,Maria Nattestad,Gunjan Baid,Sidharth Goel,Howard Yang,Andrew Carroll,Robert Eveleigh,Mathieu Bourgey,Guillaume Bourque,Gen Li,ChouXian Ma,LinQi Tang,YuanPing Du,ShaoWei Zhang,Jordi Morata,Raul Tonda,Genis Parra,Jean-Remi Trotta,Christian Brueffer,Sinem Demirkaya-Budak,Duygu Kabakci-Zorlu,Deniz Turgut,Ozem Kalay,Kubra Narci,Elif Arslan,Richard Brown, Ivan J. Johnson,Alexey Dolgoborodov,Vladimir Semenyuk,Amit Jain,H. Serhat Tetikol,Varun Jain,Mike Ruehle,Bryan Lajoie,Cooper Roddey,Severine Catreux,Rami Mehio,Mian Umair Ahsan,Qian Liu,Kai Wang,Sayed Mohammad Ebrahim Sahraeian,Li Tai Fang,Marghoob Mohiyuddin,Calvin Hung,Chirag Jain,Hanying Feng,Zhipan Li,Luoqi Chen,Fritz J. Sedlazeck,Justin M. Zook

Cell Genomicsno. 5 (2022): 100129-100129

Cited88Views0WOSBibtex

A Verified Genomic Reference Sample for Assessing Performance of Cancer Panels Detecting Small Variants of Low Allele Frequency

Jones Wendell,Gong Binsheng,Novoradovskaya Natalia,Li Dan,Kusko Rebecca,Richmond Todd A.,Johann Donald J.,Bisgin Halil,Sahraeian Sayed Mohammad Ebrahim,Bushel Pierre R.,Pirooznia Mehdi,Wilkins Katherine,Chierici Marco,Bao Wenjun,Basehore Lee Scott,Lucas Anne Bergstrom,Burgess Daniel,Butler Daniel J.,Cawley Simon,Chang Chia-Jung,Chen Guangchun,Chen Tao,Chen Yun-Ching,Craig Daniel J.,del Pozo Angela,Foox Jonathan,Francescatto Margherita,Fu Yutao,Furlanello Cesare,Giorda Kristina, Grist Kira P.,Guan Meijian,Hao Yingyi,Happe Scott,Hariani Gunjan,Haseley Nathan,Jasper Jeff,Jurman Giuseppe,Kreil David Philip,Boku University,Lai Kevin,Li Jianying,Li Quan-Zhen,Li Yulong,Li Zhiguang,Liu Zhichao, EATRIS ERIC- European Infrastructure for Translational Medicine,Miclaus Kelci, Miller Raymond,Mittal Vinay K.,Mohiyuddin Marghoob,Pabón-Peña Carlos,Parsons Barbara L.,Qiu Fujun,Shi Tieliu,Stiegelmeyer Suzy,Suo Chen,Masaryk University,Wang Dong,Wen Zhining,Wu Leihong, Harvard Medical School,Xu Chang,Yu Ying,Zhang Jiyang,Zhang Yifan,Zhang Zhihong, Fudan University,Mason Christopher E.,Willey James C.,Tong Weida,Shi Leming,Xu Joshua

Genome Biology（2021）

Cited32Views0WOSBibtex

Hidden Biases in Germline Structural Variant Detection

Khayat Michael M.,Sahraeian Sayed Mohammad Ebrahim,Zarate Samantha,Carroll Andrew,Hong Huixiao,Pan Bohu,Shi Leming,Gibbs Richard A.,Mohiyuddin Marghoob,Zheng Yuanting,Sedlazeck Fritz J.

Genome biology（2021）

Cited18Views0WOSBibtex

Establishing Community Reference Samples, Data and Call Sets for Benchmarking Cancer Mutation Detection Using Whole-Genome Sequencing

Li Tai Fang,Bin Zhu,Yongmei Zhao,Wanqiu Chen,Zhaowei Yang,Liz Kerrigan,Kurt Langenbach,Maryellen de Mars,Charles Lu,Kenneth Idler,Howard Jacob,Yuanting Zheng,Luyao Ren,Ying Yu,Erich Jaeger,Gary P. Schroth,Ogan D. Abaan,Keyur Talsania,Justin Lack,Tsai-Wei Shen,Zhong Chen,Seta Stanbouly,Bao Tran,Jyoti Shetty,Yuliya Kriga,Daoud Meerzaman,Cu Nguyen,Virginie Petitjean,Marc Sultan,Margaret Cam,Monika Mehta,Tiffany Hung,Eric Peters,Rasika Kalamegham,Sayed Mohammad Ebrahim Sahraeian,Marghoob Mohiyuddin,Yunfei Guo,Lijing Yao, Lei Song,Hugo Y. K. Lam,Jiri Drabek,Petr Vojta,Roberta Maestro,Daniela Gasparotto,Sulev Kõks,Ene Reimann,Andreas Scherer,Jessica Nordlund,Ulrika Liljedahl,Roderick V. Jensen,Mehdi Pirooznia,Zhipan Li,Chunlin Xiao,Stephen T. Sherry,Rebecca Kusko,Malcolm Moos,Eric Donaldson,Zivana Tezak,Baitang Ning,Weida Tong,Jing Li,Penelope Duerken-Hughes,Claudia Catalanotti,Shamoni Maheshwari,Joe Shuga,Winnie S. Liang,Jonathan Keats,Jonathan Adkins,Erica Tassone,Victoria Zismann,Timothy McDaniel,Jeffrey Trent,Jonathan Foox,Daniel Butler,Christopher E. Mason,Huixiao Hong,Leming Shi,Charles Wang,Wenming Xiao

Nature Biotechnology（2021）

Cited43Views0WOSNATUREBibtex

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