Logan Everett - Penn Center for Bioinformatics, University of Pennsylvania

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Bio

I am a principal investigator specializing in bioinformatics at the National Center for Computational Toxicology, part of the US EPA Office of Research and Development. My primary research focus is the development of analysis methods for high-throughput chemical screening platforms, including transcriptomic and high-content imaging technologies. I received my PhD in Genomics and Computational Biology from the University of Pennsylvania in 2010.

Research Interests

Papers共 71 篇Author StatisticsCo-AuthorSimilar Experts

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Incorporating Metabolic Competence into High-Throughput Profiling Assays

Amanda Jurgelewicz, Kristen Breaux, Clinton M Willis, Felix R Harris, Gabrielle Byrd, Joshua Witten, Derik E Haggard, Joseph L Bundy,Logan J Everett,Chad Deisenroth,Joshua A Harrill

Toxicological sciences an official journal of the Society of Toxicology (2025)

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Integrating Transcriptomic and Targeted New Approach Methodologies into a Tiered Framework for Chemical Bioactivity Screening

Jesse D Rogers, Joseph L Bundy,Joshua A Harrill, Richard J Judson, Katie Paul-Friedman,Logan J Everett

Environmental health perspectivesno. 6 (2025): 67013-67013

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Bioinformatic Workflows for Deriving Transcriptomic Points of Departure: Current Status, Data Gaps, and Research Priorities

Jason O'Brien, Constance Mitchell, Scott Auerbach, Liam Doonan,Jessica Ewald,Logan Everett,Adam Faranda,Kamin Johnson,Anthony Reardon, John Rooney, Kan Shao,Robert Stainforth, Matthew Wheeler,Deidre Dalmas Wilk,Andrew Williams,Carole Yauk,Eduardo Costa

Toxicological sciences an official journal of the Society of Toxicologyno. 2 (2025): 147-159

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TempO-seq and RNA-seq Gene Expression Levels Are Highly Correlated for Most Genes: A Comparison Using 39 Human Cell Lines

Laura J Word, Clinton M Willis, Richard S Judson,Logan J Everett, Sarah E Davidson-Fritz, Derik E Haggard, Bryant A Chambers, Jesse D Rogers, Joseph L Bundy,Imran Shah,Nisha S Sipes,Joshua A Harrill

pubmed（2025）

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Signature Analysis of High-Throughput Transcriptomics Screening Data for Mechanistic Inference and Chemical Grouping

Joshua A. Harrill,Logan J. Everett,Derik E. Haggard, Laura J. Word,Joseph L. Bundy,Bryant Chambers,Felix Harris,Clinton Willis,Russell S. Thomas,Imran Shah,Richard Judson

Toxicological Sciences (2024)

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Deriving Transcriptomic Reference Values for Chemicals from 5-Day Repeat Dose Exposure Studies in Rodents

Logan J. Everett,Leah Wehmas, Kelsey Vitense,Sarah Davidson-Fritz,Jason Lambert,John Cowden, Michael Hughes,Alison Harrill, Scott Auerbach,Mike Devito,Russell Thomas

ENVIRONMENTAL AND MOLECULAR MUTAGENESIS (2024): 34-35

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A 50-Gene Biomarker Identifies Estrogen Receptor-Modulating Chemicals in a Microarray Compendium

J. Christopher Corton,Geronimo Matteo,Brian Chorley,Jie Liu,Beena Vallanat,Logan Everett,Ella Atlas,Matthew J. Meier,Andrew Williams,Carole Lyn Yauk

CHEMICO-BIOLOGICAL INTERACTIONS (2024)

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High-Throughput Transcriptomics of Water Extracts Detects Reductions in Biological Activity with Water Treatment Processes

Jesse D. Rogers,Frederic D. L. Leusch,Bryant Chambers,Kevin D. Daniels,Logan J. Everett,Richard Judson,Keith Maruya,Alvine C. Mehinto,Peta A. Neale,Katie Paul-Friedman,Russell Thomas,Shane A. Snyder,Joshua Harrill

Environmental Science & Technology（2024）

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High-Throughput Transcriptomics Screen of ToxCast Chemicals in U-2 OS Cells

Joseph L. Bundy,Logan J. Everett,Jesse D. Rogers,Jo Nyffeler, Gabrielle Byrd,Megan Culbreth,Derik E. Haggard, Laura J. Word,Bryant A. Chambers,Sarah Davidson - Fritz,Felix Harris,Clinton Willis,Katie Paul-Friedman,Imran Shah,Richard Judson,Joshua A. Harrill

TOXICOLOGY AND APPLIED PHARMACOLOGY (2024)

Cited2Views0WOSBibtex

Exploring the Effects of Experimental Parameters and Data Modeling Approaches on in Vitro Transcriptomic Point-of-departure Estimates

Joshua A. Harrill,Logan J. Everett,Derik E. Haggard,Joseph L. Bundy,Clinton M. Willis,Imran Shah,Katie Paul Friedman,Danilo Basili,Alistair Middleton,Richard S. Judson

TOXICOLOGY (2024)

Cited6Views0WOSBibtex

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