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个人简介
I have vast experience working with high throughput sequencing data from several different pathogenic bacteria. With this data, I can perform isolate characterization and search for loci of interest. I have been utilizing pan-genomic approaches for this studies. With the core-genome, I've typed large collections of bacterial isolates and performed allele segregation studies between clusters. Utilizing the exclusive accessory genome of clusters of interest, I've given context to those clusters by identifying potential virulence factors and determinants of, for example, host or tissue specificity.
Besides the handling and analysis of large data-sets, I've experience in utilizing version control systems, including Git, for all my tool and script development, as well as with aspect- and object-oriented programming in several computer languages, but with most experience in Python and R.
研究兴趣
论文共 25 篇作者统计合作学者相似作者
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Rodrigo Balsinha Pedroso, Lucas Haniel Araújo Ventura,Lícia Torres, Giovanna Caliman Camatta,Felipe Caixeta, Leandro Souza Nascimento,Catarina Mota,Ana Catarina Mendes,Filipa Ribeiro,Henrique Cerqueira Guimarães, Rafael Calvão Barbuto,Gabriela Silveira-Nunes,
medRxiv (Cold Spring Harbor Laboratory) (2023)
Miguel Castro,Ines Almada-Correia, Carla Motta, Catarina Guerreiro,Nikita Khmelinskii,Filipa Oliveira-Ramos,Goncalo Barreto,Kari Eklund,Catarina Mendes,Mario Ramirez,Joao Fonseca,Patricia Costa-Reis
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crossref(2023)
Kevin G Libuit,Emma L Doughty,James R Otieno, Frank Ambrosio,Curtis J Kapsak, Emily A Smith,Sage M Wright,Michelle R Scribner,Robert A Petit Iii,Catarina Inês Mendes, Marcela Huergo, Gregory Legacki,
Microbial genomicsno. 7 (2023)
Inês Almada-Correia, M. Castro, Cristina Maria de Souza Motta,Catarina Sousa Guerreiro,Rita A Moura,Nikita Khmelinskii,Filipa Oliveira-Ramos,Gonçalo Barreto,Kari K. Eklund,Catarina Mendes,Mário Ramirez,João Eurico Fonseca,
Annals of the Rheumatic Diseasesno. Suppl 1 (2023): 1066.3-1067
Brett E. Pickett,Ryan Connor, Tamiru Berhanu-Denka,Sherry Bhalla,Vyacheslav Brover, Michael James Chambers,Kumardeep Chaudhary,Ousmane H. Cissé,Allissa Dillman,Moamen M. Elmassry,Michael Feldgarden, Eric Holloway,
F1000Research (2022): 160-160
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