基本信息
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Bio
Bioinformaticist with experience in High-throughput data analysis (Transcriptom, CNV, SNPs), database development, text-mining and sequencing analysis. I'am working with JMP Genomics (SAS) and R (Bioconductor).
Study of biology, ecology and microbiology in Heidelberg. PhD in Molecularbiology (Cancer research in DKFZ in Heidelberg). Ten years of experience in bioinformatics.
Development and administration of our miRNA-target prediction database miRWalk (mirwalk.umm.uni-heidelberg.de). miRWalk is currently hostet on virtual server structure on a cloud infrastructure of the university of heidelberg (heiCloud). Most of the prediction work was performed on the bwUniCluster, part of the bwHPC. Interface is realized with Django framework.
My current job profile responsibilities are:
Leader of the Affymetrix Core facility, Center of medical research Mannheim, University of Heidelberg.
Core responsibilities:
- To conceptualize, design and analyze microarray-experiments
- To teach studtents and PHDs in bioinformatics
- To supervise students and PHDs (Bachelor, Master and doctor thesis)
- to provide bioinformatics support to my collaborators
- to perform statistical- and bioinformatics-analysis
- support molecular biology data generation and management, as well as lead the analysis and interpretation of experimental results including quality controls and performance metrics
Skills: HTML, CSS, MySQL, LaTex, Python, VBA, R, SAS
Software: JMP Genomics (SAS), SAS Enterprise Guide, R (Bioconductor), SPSS, Expression
Console (Affymetrix), GSEA (Broad Institute), ChAS, Genotyping Console (Affymetrix), Cytoscape, PathVisio, RStudio, MSWord, MSExcel, MSAccess, Dreamweaver,
Geany, Photoshop, Gimp
keywords:
- Microarray Expression Profiling
- Data Mining
- Text Mining
- Pathway- and Functional Analysis
- Transcription Factor Binding Site Search
- miRNA Binding Prediction
- SNP Array Analysis
- Next Generation Sequencing Analysis (RNA-seq, ChIP-seq, Single-Cell-sequencing)
Study of biology, ecology and microbiology in Heidelberg. PhD in Molecularbiology (Cancer research in DKFZ in Heidelberg). Ten years of experience in bioinformatics.
Development and administration of our miRNA-target prediction database miRWalk (mirwalk.umm.uni-heidelberg.de). miRWalk is currently hostet on virtual server structure on a cloud infrastructure of the university of heidelberg (heiCloud). Most of the prediction work was performed on the bwUniCluster, part of the bwHPC. Interface is realized with Django framework.
My current job profile responsibilities are:
Leader of the Affymetrix Core facility, Center of medical research Mannheim, University of Heidelberg.
Core responsibilities:
- To conceptualize, design and analyze microarray-experiments
- To teach studtents and PHDs in bioinformatics
- To supervise students and PHDs (Bachelor, Master and doctor thesis)
- to provide bioinformatics support to my collaborators
- to perform statistical- and bioinformatics-analysis
- support molecular biology data generation and management, as well as lead the analysis and interpretation of experimental results including quality controls and performance metrics
Skills: HTML, CSS, MySQL, LaTex, Python, VBA, R, SAS
Software: JMP Genomics (SAS), SAS Enterprise Guide, R (Bioconductor), SPSS, Expression
Console (Affymetrix), GSEA (Broad Institute), ChAS, Genotyping Console (Affymetrix), Cytoscape, PathVisio, RStudio, MSWord, MSExcel, MSAccess, Dreamweaver,
Geany, Photoshop, Gimp
keywords:
- Microarray Expression Profiling
- Data Mining
- Text Mining
- Pathway- and Functional Analysis
- Transcription Factor Binding Site Search
- miRNA Binding Prediction
- SNP Array Analysis
- Next Generation Sequencing Analysis (RNA-seq, ChIP-seq, Single-Cell-sequencing)
Research Interests
Papers共 284 篇Author StatisticsCo-AuthorSimilar Experts
By YearBy Citation主题筛选期刊级别筛选合作者筛选合作机构筛选
时间
引用量
主题
期刊级别
合作者
合作机构
biorxiv(2024)
Neuropsychopharmacologyno. 10 (2024): 1528-1539
Laura Armbruster, Marlena Pożoga,Zhongshou Wu,Jürgen Eirich,Karen Thulasi Devendrakumar,Carolina De La Torre,Pavlina Miklánková,Monika Huber, Fabian Bradic,Gernot Poschet,Jonas Weidenhausen,Sabine Merker,
J. Wingert, E. Meinhardt, N. Sasipong, M. Pott, C. Lederer, C. de la Torre,C. Sticht,P. Most,H. A. Katus,N. Frey,P. W. J. Raake,P. Schlegel
Biochemical pharmacologypp.116305-116305, (2024)
FRONTIERS IN IMMUNOLOGY (2024): 1228928-1228928
The American Journal of Pathologyno. 1 (2024): 52-70
AMERICAN JOURNAL OF PATHOLOGYno. 1 (2024): 52-70
Alexandru Gudima, David Hesselbarth, Guanhao Li,Vladimir Riabov,Julia Michel, Quan Liu,Christina Schmuttermaier, Zhen Jiao,Carsten Sticht,Ahmed Jawhar,Udo Obertacke,Harald Klueter,
Journal of leukocyte biology (2024)
crossref(2023)
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Author Statistics
#Papers: 277
#Citation: 8337
H-Index: 43
G-Index: 86
Sociability: 7
Diversity: 4
Activity: 169
Co-Author
Co-Institution
D-Core
- 合作者
- 学生
- 导师
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