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个人简介
Comparative and evolutionary genomics: Employing a combination of comparative, computational and experimental genomics approaches to address the mechanistic basis that underlies structural and functional genomic changes in flowering plants, with an emphasis on duplication-driven and transposon-mediated gene and genome evolution. Genetic dissection of complex traits: Employing a combination of genomics, proteomics, molecular biology and genetics approaches to dissect
complex traits of agronomic importance such as soybean plant architecture, yield components, disease resistance, as well as traits underlying soybean domestication.
Publications (part):
• Shen, F., Huang, Z., Zhang, B., Wang, Y., Zhang, X., Wu, T., Xu, X., Zhang, X., & Han, Z.
(2019). Mapping gene markers for apple fruit ring rot disease resistance using a multi-omics
approach. G3: Genes, Genomes, Genetics, 9(5), 1663–1678. (IF=3.01)
Shixiao Xu, Yongle Ding, Juntao Sun, Zhiqiang Zhang, Zhaoyun Wu, Tiezhao Yang, Fei Shen# and Gang Xue# A high-quality genome assembly of Jasminum sambac provides insight into floral trait formation and Oleaceae genome evolution. (2021). Molecular Ecology Resource (In press). (Corresponding author) (IF=7.09)
• Li X#, Shen F#, Xu X, Zheng Q, Wang Y, Wu T, Li W, Qiu C, Xu X, Han Z, Zhang X (2021). An HD-ZIP transcription factor, MxHB13, integrates auxin-regulated and juvenility-determined control of adventitious rooting in Malus xiaojinensis. The Plant Journal. 2021 Jul 4. (doi: 10.1111/tpj.15406) (IF=6.14) (co-first author)
• Zhenyu Huang, #, Fei Shen#, Yuling Chen, Ke Cao, Lirong Wang (2021). Chromosome scale Genome Assembly and Population Genomic Analysis Provide Insights into the Adaptation, Domestication, and Flavonoid Metabolism of Chinese Plum (Prunus salicina Lindl.). The Plant Journal. (In press) (IF=6.14) (co-first author)
• Zhao, J.#, Shen, F# , Gao, Y., Wang, D., & Wang, K. (2019). Parallel Bud Mutation Sequencing Reveals that Fruit Sugar and Acid Metabolism Potentially Influence Stress in Malus. International Journal of Molecular Sciences, 20(23), 5988. (IF=5.9)
• Huang, Z# ., Shen, F.# , Chen, Y., Cao, K., & Wang, L. (2021). Preliminary Identification of Key Genes Controlling Peach Pollen Fertility Using Genome-Wide Association Study. Plants, 10(2), 242. (IF=3.18)
• Xiao Wei#, Fei Shen#, Qiuping Zhang, Ning Liu, Yuping Zhang, Ming Xu, Shuo Liu, Yujun Zhang, Xiaoxue Ma, Weisheng Liu (2021). Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing. Tree Genetics & Genomes 17 (3), 1-10 (IF=2.01)
• Wensheng Wang, Ramil Mauleon, …, Fei Shen, et al., (2018). Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. 7703(557): 43-49. (IF=42.0)
• Zheng, W., Shen, F., Wang, W., Wu, B., Wang, X., Xiao, C., Tian, Z., Yang, X., Yang, J., Wang, Y., & others. (2020). Quantitative trait loci-based genomics-assisted prediction for the
degree of apple fruit cover color. The Plant Genome, 13(3), e20047. (IF=4.06)
• Wu, B., Shen, F., Chen, C. J., Liu, L., Wang, X., Zheng, W. Y., Deng, Y., Wang, T., Huang, Z. Y., Xiao, C., & others. (2021). Natural variations in a pectin acetylesterase gene, MdPAE10,
contribute to prolonged apple fruit shelf life. The Plant Genome, e20084. (IF=4.06)
• Liu, J., Shen, F., Xiao, Y., Fang, H., Qiu, C., Li, W., Wu, T., Xu, X., Wang, Y., Zhang, X., &
others. (2020). Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks. BMC Genomics, 21(1), 1–16. (IF=3.59)
• Zheng, C., Shen, F., Wang, Y., Wu, T., Xu, X., Zhang, X., & Han, Z. (2020). Intricate genetic
variation networks control the adventitious root growth angle in apple. BMC Genomics, 21(1), 1–18 (IF=3.59)
• Wang, X., Shen, F., Gao, Y., Wang, K., Chen, R., Luo, J., Yang, L., Zhang, X., Qiu, C., Li, W., & others. (2020). Application of genome-wide insertion/deletion markers on genetic structure
analysis and identity signature of Malus accessions. BMC Plant Biology, 20(1), 1–13
• Wu, B., Shen, F., Wang, X., Zheng, W. Y., Xiao, C., Deng, Y., Wang, T., Huang, Z. Y., Zhou, Q., Wang, Y., & others. (2020). Role of MdERF3 and MdERF118 natural variations in apple flesh firmness/crispness retainability and development of QTL-based genomics-assisted
prediction. Plant Biotechnology Journal. 19 (5), 1022-1037. (IF=9.1)
• Jia, D., Shen, F., Wang, Y., Wu, T., Xu, X., Zhang, X., & Han, Z. (2018). Apple fruit acidity is
genetically diversified by natural variations in three hierarchical epistatic genes: MdSAUR37, MdPP2CH and MdALMTII. The Plant Journal, 95(3), 427–443. (IF=6.14)
研究兴趣
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HORTICULTURE RESEARCHno. 3 (2024): uhae023-uhae023
BMC Biologyno. 1 (2023): 1-14
JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCEno. 2 (2023): 53-63
Heliyonno. 5 (2023): e16258-e16258
Frontiers in plant science (2023): 1232466
Nature Communicationsno. 1 (2023): 1-19
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